Milestones around Decapolis
Petra Hermankova
26/03/2021
1 Initial setup
1.1 Setup of the environment:
devtools::install_github("sdam-au/sdam") # loading SDAM custom package, if not working try devtools::install_github("mplex/cEDCSar", subdir="pkg/sdam")## Error in get(genname, envir = envir) : object 'testthat_print' not found#devtools::install_github("mplex/cEDCSar", subdir="pkg/sdam")
library(tidyverse)
library(sdam)
library(jsonlite)
library(getPass)
library(formatR)
library(leaflet)This notebook explores all the milestones from Roman provinces Arabia, Syria and Palaestina in the Epigraphic Database Clauss-Slaby (http://www.manfredclauss.de/, henceforth EDCS). The primary aim is to:
- find all inscriptions categorized as ‘milestones’
- provide basic descriptive statistics: how many there are, what categories of monuments we have, what materials they are made from, where do they come from etc.
- display all the milestones on the map along with the map of Roman provinces and Roman roads
The script takes the reader through all the steps of selection, descriptive statistics and through the various displays on the interactive map. Address all the questions and comments to petra.hermankova@cas.au.dk.
1.2 Loading data
Load the dataset, if you have Sciencedata.dk credentials
resp2 = request("EDCS_text_cleaned_2021-03-01.json", path="/sharingin/648597@au.dk/SDAM_root/SDAM_data/EDCS/public", method="GET", cred=mycred_secret)OR anonymously:
resp2 = request("EDCS_text_cleaned_2021-03-01.json", path="/public/1f5f56d09903fe259c0906add8b3a55e/", method="GET", anonymous = TRUE, cred = NULL)Make a list and tibble from the downloaded dataset
list_json2 <- jsonlite::fromJSON(resp2)
EDCS_tibble = as_tibble(list_json2)2 Decapolis
decapolis <- c("Jerash", "Aydoun", "Scythopolis", "Hippos", "Gadara", "Pella", "Philadelphia", "Canatha", "Raphana", "Damascus")
EDCS_tibble %>%
filter(place %in% str_subset(place, decapolis)) %>%
View()## Warning in stri_subset_regex(string, pattern, omit_na = TRUE, negate = negate, :
## longer object length is not a multiple of shorter object lengthdecapolis_province <- c("Syria", "Palaestina", "Arabia")
decapolis_milestones<- EDCS_tibble %>%
filter(province %in% str_subset(province, decapolis_province)) %>%
filter(inscr_type %in% str_subset(inscr_type, "miliaria"))## Warning in stri_subset_regex(string, pattern, omit_na = TRUE, negate = negate, :
## longer object length is not a multiple of shorter object length## Warning in stri_subset_regex(string, pattern, omit_na = TRUE, negate = negate, :
## argument is not an atomic vector; coercing3 How many milestones?
nrow(decapolis_milestones)## [1] 10384 In which province?
decapolis_milestones %>%
count(province, sort=T)5 In which place?
decapolis_milestones %>%
count(place, sort=T)6 When
6.1 Mean value of the date interval
dates<- decapolis_milestones %>%
mutate(mean = rowMeans(decapolis_milestones[,22:23]))
dates %>%
ggplot(aes(x=mean)) +
geom_histogram(fill="orange", size=1, binwidth = 10) +
labs(x = "Date (ar. mean)", y = "Number of inscription", title = "Number of dated milestones in time (ar. mean) in ten year bins", subtitle = "n = 3737" ) +
theme_linedraw(base_size = 12) +
scale_x_discrete(limits=c(-100,1,100,200, 250, 300, 400))+
geom_vline(aes(xintercept=250))## Warning: Removed 708 rows containing non-finite values (stat_bin).
7 Map
decapolis_milestones$Latitude <- as.numeric(decapolis_milestones$Latitude)
decapolis_milestones$Longitude <- as.numeric(decapolis_milestones$Longitude)## Loading required package: sp## rgdal: version: 1.5-19, (SVN revision 1092)
## Geospatial Data Abstraction Library extensions to R successfully loaded
## Loaded GDAL runtime: GDAL 3.0.4, released 2020/01/28
## Path to GDAL shared files: /usr/share/gdal
## GDAL binary built with GEOS: TRUE
## Loaded PROJ runtime: Rel. 7.0.0, March 1st, 2020, [PJ_VERSION: 700]
## Path to PROJ shared files: /home/petra/.local/share/proj:/usr/share/proj
## PROJ CDN enabled: FALSE
## Linking to sp version:1.4-2
## To mute warnings of possible GDAL/OSR exportToProj4() degradation,
## use options("rgdal_show_exportToProj4_warnings"="none") before loading rgdal.##
## Attaching package: 'raster'## The following object is masked from 'package:dplyr':
##
## select## The following object is masked from 'package:tidyr':
##
## extract## Linking to GEOS 3.8.0, GDAL 3.0.4, PROJ 7.0.0Source of Roads shapefile: http://awmc.unc.edu/awmc/map_data/shapefiles/ba_roads/ Source of Roman provinces (AD 200): http://awmc.unc.edu/awmc/map_data/shapefiles/cultural_data/political_shading/roman_empire_ad_200/shape/
## Warning in dir.create("../data/ba_roads"): '../data/ba_roads' already exists## Warning in unzip("../data/ba_roads.zip", exdir = "../data/ba_roads/"): error 1
## in extracting from zip file## Warning in dir.create("../data/roman_empire_200_ad_provinces"): '../data/
## roman_empire_200_ad_provinces' already exists## Warning in unzip("../data/roman_empire_ad_200_provinces.zip", exdir = "../data/
## roman_empire_200_ad_provinces"): error 1 in extracting from zip file## Reading layer `ba_roads' from data source `/home/petra/Github/epigraphic_roads/data/ba_roads/ba_roads.shp' using driver `ESRI Shapefile'
## replacing null geometries with empty geometries
## Simple feature collection with 2739 features and 26 fields (with 1 geometry empty)
## geometry type: LINESTRING
## dimension: XY
## bbox: xmin: -9.29586 ymin: 23.90006 xmax: 52.88473 ymax: 56.52055
## geographic CRS: WGS 84## Reading layer `roman_empire_ad_200_provinces' from data source `/home/petra/Github/epigraphic_roads/data/roman_empire_200_ad_provinces/roman_empire_ad_200_provinces.shp' using driver `ESRI Shapefile'
## replacing null geometries with empty geometries
## Simple feature collection with 81 features and 11 fields (with 1 geometry empty)
## geometry type: LINESTRING
## dimension: XY
## bbox: xmin: NA ymin: NA xmax: NA ymax: NA
## geographic CRS: WGS 84library(leaflet)
map_decapolis_milestones_EDCS<- leaflet(width="100%") %>%
#addProviderTiles("Stamen.Watercolor")%>% # Add CartoDB map tiles
addProviderTiles("Stamen.TerrainBackground")%>% # Add CartoDB map tiles
#addProviderTiles("Esri.WorldTopoMap", group = "Topo") %>%
#addProviderTiles("Esri.WorldImagery", group = "ESRI Aerial") %>%
setView( lng = 35.9239625, lat = 31.9515694, zoom = 5 ) %>%
#setMaxBounds(lat1=43.633977, lng1 =-11.227926 , lat2=35.133882 , lng2=50.882336) %>%
addPolylines(data = roads, color = "purple", weight = 1, opacity = 0.7) %>%
addCircles(lng = decapolis_milestones$Longitude,
lat = decapolis_milestones$Latitude, opacity = 0.5, radius = 10, fill = TRUE, color = "blue" , fillColor = "red",
popup = paste0("<b> InscriptionID: </b>", decapolis_milestones$`EDCS-ID`,
"<br><b> Ancient findspot: </b>", decapolis_milestones$place,
"<br><b> Type of inscription: </b>", decapolis_milestones$inscr_type,
"<br><b> Material: </b>", decapolis_milestones$Material,
"<br><b> Not before (date): </b>", decapolis_milestones$start_yr,
"<br><b> Not after (date): </b>", decapolis_milestones$end_yr_1,
"<br><b> Commentary: </b>", decapolis_milestones$Comment),
) %>%
addLegend(position = "topright",
colors = c("Blue", "Purple"),
labels = c("Milestones", "Roman roads (BA atlas)"), opacity = 1,
title = "Milestones around Decapolis"
)## Warning in validateCoords(lng, lat, funcName): Data contains 181 rows with
## either missing or invalid lat/lon values and will be ignoredmap_decapolis_milestones_EDCS8 Export as CSV
road_decapolis<- decapolis_milestones %>%
dplyr::select(`EDCS-ID`, province, place, start_yr, end_yr_1, inscr_type, inscription, clean_text_interpretive_word, language, Latitude, Longitude, Material) %>%
unnest_wider(inscr_type) %>%
rename("inscr_type1" = "...1", "inscr_type2" = "...2","inscr_type3" = "...3")## New names:
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## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
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## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## * `` -> ...2
## * `` -> ...3## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## * `` -> ...2
## * `` -> ...3## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1
## New names:
## * `` -> ...1## New names:
## * `` -> ...1
## * `` -> ...2
## New names:
## * `` -> ...1
## * `` -> ...2write.csv(road_decapolis, "../output/Milestones_EDCS_decapolis.csv", row.names = T)